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  5. Bradi4g36780

Bradi4g36780


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0009405 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009405_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g36780
Cluster HCCA clusters: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
MA_933431g0010 No alias (at1g20300 : 538.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Seita.2G293000.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 137 164
IPR002885 Pentatricopeptide_repeat 174 199
IPR002885 Pentatricopeptide_repeat 307 355
IPR002885 Pentatricopeptide_repeat 237 285
IPR002885 Pentatricopeptide_repeat 437 486
IPR002885 Pentatricopeptide_repeat 368 428
No external refs found!