1. Home
  2. Species
  3. Brachypodium distachyon
  4. Sequence
  5. Bradi4g38420

Bradi4g38420


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g38420
Cluster HCCA clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
A4A49_23672 No alias pentatricopeptide repeat-containing protein, mitochondrial 0.02 Orthogroups_2024-Update
At2g01510 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.02 Orthogroups_2024-Update
At2g39620 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.02 Orthogroups_2024-Update
At4g18840 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.02 Orthogroups_2024-Update
Bradi2g37360 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g29450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.F01240.1 No alias RNA editing factor *(CWM1) 0.02 Orthogroups_2024-Update
Brara.J02104.1 No alias RNA editing factor *(RARE1) 0.02 Orthogroups_2024-Update
HORVU1Hr1G083680.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.01 Orthogroups_2024-Update
HORVU5Hr1G066010.3 No alias RNA editing factor *(OTP87) 0.02 Orthogroups_2024-Update
HORVU7Hr1G038460.2 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g10090 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g19380 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os01g62910 No alias CRR2, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g06880 No alias EMB2758, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g13830 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g53630 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g39910 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os08g28830 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
MA_10432670g0020 No alias (at3g02010 : 676.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_385322g0010 No alias (at1g08070 : 385.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00024580-RA No alias (at4g02750 : 440.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.005G215500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G047600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G293300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.5G405500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc09g065710 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Predicted GO
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Predicted GO
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Predicted GO
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 277 324
IPR032867 DYW_dom 451 563
IPR002885 Pentatricopeptide_repeat 250 272
IPR002885 Pentatricopeptide_repeat 351 376
IPR002885 Pentatricopeptide_repeat 145 169
No external refs found!