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  5. Bradi4g41050

Bradi4g41050


Description : ribosomal protein 5B


Gene families : OG_42_0002111 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g41050
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
164593 No alias ribosomal protein 5A 0.08 Orthogroups_2024-Update
271466 No alias ribosomal protein 5B 0.02 Orthogroups_2024-Update
A4A49_35794 No alias 40s ribosomal protein s5-2 0.04 Orthogroups_2024-Update
At2g37270 No alias 40S ribosomal protein S5-1... 0.03 Orthogroups_2024-Update
Bradi2g03760 No alias ribosomal protein 5A 0.03 Orthogroups_2024-Update
Brara.A03377.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Brara.C01872.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Brara.C03392.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Brara.D02263.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.E00779.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.11 Orthogroups_2024-Update
Brara.E02892.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Cre06.g290950 No alias ribosomal protein 5B 0.15 Orthogroups_2024-Update
GRMZM2G078985 No alias ribosomal protein 5A 0.08 Orthogroups_2024-Update
Glyma.02G167900 No alias ribosomal protein 5B 0.07 Orthogroups_2024-Update
Glyma.09G103400 No alias ribosomal protein 5B 0.13 Orthogroups_2024-Update
Glyma.12G201900 No alias ribosomal protein 5B 0.06 Orthogroups_2024-Update
Glyma.13G300300 No alias ribosomal protein 5B 0.04 Orthogroups_2024-Update
HORVU3Hr1G015190.2 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Kfl00737_0010 kfl00737_0010_v1.1 (o65731|rs5_cicar : 338.0) 40S ribosomal protein S5... 0.05 Orthogroups_2024-Update
MA_10428487g0010 No alias (at2g37270 : 350.0) One of two genes encoding the... 0.05 Orthogroups_2024-Update
Mp3g10570.1 No alias component RPS5 of SSU proteome 0.09 Orthogroups_2024-Update
Potri.006G197700 No alias ribosomal protein 5B 0.06 Orthogroups_2024-Update
Pp1s10_385V6 No alias 40s ribosomal protein s5 0.1 Orthogroups_2024-Update
Pp1s114_143V6 No alias 40s ribosomal protein s5 0.03 Orthogroups_2024-Update
Seita.5G065000.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Seita.8G114300.1 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Sobic.003G109600.2 No alias component *(uS7) of small ribosomal-subunit (SSU) proteome 0.16 Orthogroups_2024-Update
Solyc10g078620 No alias Ribosomal protein S5/S7 (AHRD V3.3 *** A0A103XH68_CYNCS) 0.14 Orthogroups_2024-Update
Solyc11g042610 No alias Ribosomal protein S5/S7 (AHRD V3.3 *** A0A103XH68_CYNCS) 0.08 Orthogroups_2024-Update
Sopen10g029250 No alias Ribosomal protein S7p/S5e 0.13 Orthogroups_2024-Update
Sopen11g018760 No alias Ribosomal protein S7p/S5e 0.07 Orthogroups_2024-Update
evm.model.contig_670.1 No alias (o65731|rs5_cicar : 298.0) 40S ribosomal protein S5... 0.12 Orthogroups_2024-Update
evm.model.tig00021332.10 No alias (o65731|rs5_cicar : 303.0) 40S ribosomal protein S5... 0.14 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004399 histidinol dehydrogenase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006177 GMP biosynthetic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009163 nucleoside biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
BP GO:0042451 purine nucleoside biosynthetic process IEP Predicted GO
BP GO:0042455 ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046037 GMP metabolic process IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046129 purine ribonucleoside biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901070 guanosine-containing compound biosynthetic process IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
BP GO:1901659 glycosyl compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR023798 Ribosomal_S7_dom 57 199
No external refs found!