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  5. Bradi4g41680

Bradi4g41680


Description : ribosomal protein 1


Gene families : OG_42_0002422 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002422_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g41680
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
270706 No alias ribosomal protein 1 0.15 Orthogroups_2024-Update
Brara.B02465.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Brara.I01735.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
GRMZM2G109677 No alias ribosomal protein 1 0.03 Orthogroups_2024-Update
Glyma.20G168100 No alias ribosomal protein 1 0.1 Orthogroups_2024-Update
HORVU4Hr1G019980.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
HORVU5Hr1G036630.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Kfl01033_0020 kfl01033_0020_v1.1 (at1g61580 : 584.0) R-protein L3 B (RPL3B); FUNCTIONS... 0.12 Orthogroups_2024-Update
LOC_Os11g06750 No alias ribosomal protein L3, putative, expressed 0.04 Orthogroups_2024-Update
MA_10432758g0010 No alias (p35684|rl3_orysj : 667.0) 60S ribosomal protein L3... 0.05 Orthogroups_2024-Update
MA_124178g0010 No alias (p35684|rl3_orysj : 658.0) 60S ribosomal protein L3... 0.02 Orthogroups_2024-Update
Mp1g18990.1 No alias component RPL3 of LSU proteome component 0.08 Orthogroups_2024-Update
PSME_00045974-RA No alias (p35684|rl3_orysj : 681.0) 60S ribosomal protein L3... 0.02 Orthogroups_2024-Update
PSME_00049106-RA No alias (p35684|rl3_orysj : 665.0) 60S ribosomal protein L3... 0.02 Orthogroups_2024-Update
Potri.002G066200 No alias ribosomal protein 1 0.1 Orthogroups_2024-Update
Potri.005G194500 No alias ribosomal protein 1 0.09 Orthogroups_2024-Update
Pp1s330_36V6 No alias ribosomal protein l3 0.24 Orthogroups_2024-Update
Seita.7G290900.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Seita.8G046000.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.005G050500.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Sobic.006G216600.1 No alias component *(uL3) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Solyc01g104590 No alias ribosomal protein L3 0.3 Orthogroups_2024-Update
Sopen01g045870 No alias Ribosomal protein L3 0.04 Orthogroups_2024-Update
Sopen01g047100 No alias Ribosomal protein L3 0.29 Orthogroups_2024-Update
evm.model.contig_2059.33 No alias (at1g61580 : 514.0) R-protein L3 B (RPL3B); FUNCTIONS... 0.24 Orthogroups_2024-Update
evm.model.tig00000025.50 No alias (p35684|rl3_orysj : 551.0) 60S ribosomal protein L3... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 370
No external refs found!