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  5. Bradi4g44712

Bradi4g44712


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi4g44712
Cluster HCCA clusters: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
114142 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Orthogroups_2024-Update
150456 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.09 Orthogroups_2024-Update
26969 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
At1g16480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein... 0.03 Orthogroups_2024-Update
Brara.A00680.1 No alias RNA editing factor *(MEF29) 0.02 Orthogroups_2024-Update
Brara.E00200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I04209.1 No alias RNA editing factor *(MEF100) 0.02 Orthogroups_2024-Update
Glyma.02G250600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
MA_10432670g0020 No alias (at3g02010 : 676.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00004170-RA No alias (at2g27610 : 399.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00004346-RA No alias (at4g18750 : 679.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00005432-RA No alias (at1g11290 : 677.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00007543-RA No alias (at2g22070 : 594.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00009521-RA No alias (at4g18750 : 696.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00016248-RA No alias (at3g12770 : 631.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
PSME_00024580-RA No alias (at4g02750 : 440.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00025196-RA No alias (at3g03580 : 681.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056843-RA No alias (at4g02750 : 457.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
Seita.7G165500.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 240 287
IPR032867 DYW_dom 517 639
IPR002885 Pentatricopeptide_repeat 485 511
IPR002885 Pentatricopeptide_repeat 416 440
IPR002885 Pentatricopeptide_repeat 316 343
IPR002885 Pentatricopeptide_repeat 142 162
IPR002885 Pentatricopeptide_repeat 114 137
IPR002885 Pentatricopeptide_repeat 344 373
No external refs found!