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  5. Bradi5g08853

Bradi5g08853


Description : photosystem II reaction center protein E


Gene families : OG_42_0004228 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g08853
Cluster HCCA clusters: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
Bradi1g39213 No alias photosystem II reaction center protein E 0.02 Orthogroups_2024-Update
Bradi5g23871 No alias photosystem II reaction center protein E 0.02 Orthogroups_2024-Update
Seita.J013200.1 No alias component alpha *(PsbE) of PS-II cytochrome b559... 0.02 Orthogroups_2024-Update
Seita.J021600.1 No alias component alpha *(PsbE) of PS-II cytochrome b559... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA InterProScan predictions
BP GO:0015979 photosynthesis IEA InterProScan predictions
CC GO:0016021 integral component of membrane IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR013082 PSII_cytb559_asu_lum 97 134
No external refs found!