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  5. Bradi5g10620

Bradi5g10620


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0009146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g10620
Cluster HCCA clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
MA_35442g0010 No alias (at2g13600 : 723.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
Potri.007G104700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Seita.7G103600.1 No alias RNA editing factor *(SLO2) 0.03 Orthogroups_2024-Update
Sopen04g004180 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 342 389
IPR002885 Pentatricopeptide_repeat 450 496
IPR002885 Pentatricopeptide_repeat 210 257
IPR002885 Pentatricopeptide_repeat 80 103
IPR002885 Pentatricopeptide_repeat 524 549
IPR002885 Pentatricopeptide_repeat 424 447
IPR002885 Pentatricopeptide_repeat 52 74
IPR002885 Pentatricopeptide_repeat 286 311
No external refs found!