Bradi5g12430

Description : Ribosomal protein PSRP-3/Ycf65

Gene families : OG_42_0004267 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004267_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi5g12430
Cluster	HCCA clusters: Cluster_53

Target	Alias	Description	ECC score	Gene Family Method
A4A49_01457	No alias	30s ribosomal protein 3, chloroplastic	0.04	Orthogroups_2024-Update
Brara.G02807.1	No alias	component *(cS23) of small plastid ribosomal-subunit proteome	0.04	Orthogroups_2024-Update
Cre02.g083950	No alias	Ribosomal protein PSRP-3/Ycf65	0.03	Orthogroups_2024-Update
GRMZM2G361569	No alias	Ribosomal protein PSRP-3/Ycf65	0.02	Orthogroups_2024-Update
Glyma.08G364600	No alias	Ribosomal protein PSRP-3/Ycf65	0.03	Orthogroups_2024-Update
LOC_Os04g38750	No alias	plastid-specific 30S ribosomal protein 3, chloroplast...	0.03	Orthogroups_2024-Update
MA_10432955g0010	No alias	(p82412\|rrp3_spiol : 136.0) Plastid-specific 30S...	0.02	Orthogroups_2024-Update
MA_19834g0010	No alias	(p82412\|rrp3_spiol : 149.0) Plastid-specific 30S...	0.03	Orthogroups_2024-Update
Mp2g13520.1	No alias	component psPSRP3 of small ribosomal subunit proteome	0.02	Orthogroups_2024-Update
PSME_00010739-RA	No alias	(p82412\|rrp3_spiol : 149.0) Plastid-specific 30S...	0.03	Orthogroups_2024-Update
Potri.010G127300	No alias	Ribosomal protein PSRP-3/Ycf65	0.03	Orthogroups_2024-Update
Pp1s14_169V6	No alias	plastid-specific 30s ribosomal protein chloroplast	0.07	Orthogroups_2024-Update
Pp1s242_42V6	No alias	plastid-specific 30s ribosomal protein chloroplast	0.03	Orthogroups_2024-Update
Seita.7G125300.1	No alias	component *(cS23) of small plastid ribosomal-subunit proteome	0.03	Orthogroups_2024-Update
Solyc05g009570	No alias	30S ribosomal protein 3 (AHRD V3.3 *** W9SB90_9ROSA)	0.03	Orthogroups_2024-Update
Sopen03g006970	No alias	Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005622	intracellular	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006353	DNA-templated transcription, termination	IEP	Predicted GO
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	Predicted GO
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	Predicted GO
MF	GO:0016836	hydro-lyase activity	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
BP	GO:0034311	diol metabolic process	IEP	Predicted GO
BP	GO:0034312	diol biosynthetic process	IEP	Predicted GO
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	Predicted GO
BP	GO:0046165	alcohol biosynthetic process	IEP	Predicted GO
BP	GO:0046173	polyol biosynthetic process	IEP	Predicted GO
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Predicted GO
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR006924	Ribosomal_PSRP3/Ycf65	127	173

External Links

No external refs found!

Bradi5g12430

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation