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  5. Bradi5g13310

Bradi5g13310


Description : Vacuolar sorting protein 9 (VPS9) domain


Gene families : OG_42_0001573 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001573_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g13310
Cluster HCCA clusters: Cluster_203

Target Alias Description ECC score Gene Family Method Actions
At1g62350 No alias Pentatricopeptide repeat (PPR) superfamily protein... 0.03 Orthogroups_2024-Update
Glyma.11G135100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os07g36450 No alias PPR repeat domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Seita.2G345800.1 No alias plastidial RNA splicing factor *(THA8) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0004424 imidazoleglycerol-phosphate dehydratase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006547 histidine metabolic process IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Predicted GO
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Predicted GO
CC GO:0017053 transcriptional repressor complex IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
MF GO:0033897 ribonuclease T2 activity IEP Predicted GO
BP GO:0052803 imidazole-containing compound metabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!