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  5. Sopen07g016320

Sopen07g016320


Description : PPR repeat family


Gene families : OG_42_0005701 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005701_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g016320
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
A4A49_31180 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
Brara.I00534.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G003869 No alias protein kinase family protein 0.03 Orthogroups_2024-Update
Glyma.05G230700 No alias protein kinase family protein 0.04 Orthogroups_2024-Update
Glyma.08G038200 No alias protein kinase family protein 0.05 Orthogroups_2024-Update
Glyma.14G141800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g12810 No alias retrotransposon protein, putative, unclassified, expressed 0.04 Orthogroups_2024-Update
Potri.018G081700 No alias protein kinase family protein 0.07 Orthogroups_2024-Update
Seita.4G216900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc07g032380 No alias DNA LIGASE 6 (AHRD V3.3 --* AT1G66730.1) 0.14 Orthogroups_2024-Update
Sopen08g022090 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 313 361
IPR002885 Pentatricopeptide_repeat 177 222
IPR002885 Pentatricopeptide_repeat 383 429
IPR002885 Pentatricopeptide_repeat 91 150
IPR002885 Pentatricopeptide_repeat 235 289
No external refs found!