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  5. Bradi5g14000

Bradi5g14000


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g14000
Cluster HCCA clusters: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
108652 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
110016 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
114611 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
123298 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
126194 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
51483 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
92008 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_13653 No alias pentatricopeptide repeat-containing protein 0.04 Orthogroups_2024-Update
At2g41080 No alias Pentatricopeptide repeat-containing protein At2g41080... 0.02 Orthogroups_2024-Update
At4g14820 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.05 Orthogroups_2024-Update
At4g33170 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.03 Orthogroups_2024-Update
At5g03800 No alias Glycosyltransferase (Fragment)... 0.03 Orthogroups_2024-Update
At5g56310 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.02 Orthogroups_2024-Update
Bradi1g03670 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g22840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g48200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g40080 No alias mitochondrial editing factor 19 0.04 Orthogroups_2024-Update
Brara.A02032.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.G01460.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.H01279.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K00527.1 No alias RNA editing factor *(MEF29) 0.03 Orthogroups_2024-Update
GRMZM2G076257 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G085089 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G099875 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G143377 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G022002 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G078900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G141600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G062300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.20G155800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G084530.3 No alias RNA editing factor *(SLO4) 0.04 Orthogroups_2024-Update
HORVU3Hr1G079860.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G067540.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G079090.7 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU5Hr1G101000.3 No alias RNA editing factor *(DEK36) 0.03 Orthogroups_2024-Update
HORVU6Hr1G057130.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU7Hr1G038460.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g14130 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g21910 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g41120 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g05560 No alias expressed protein 0.03 Orthogroups_2024-Update
LOC_Os08g38610 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os09g24680 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g01836 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g36620 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_10248752g0010 No alias (at3g23330 : 422.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_10293513g0010 No alias (at4g13650 : 527.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_10426261g0020 No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_14938g0010 No alias (at2g22070 : 608.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_168311g0010 No alias (at4g02750 : 377.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_174226g0010 No alias (at4g13650 : 687.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_211508g0010 No alias (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_22485g0010 No alias (at3g46790 : 552.0) Encodes a member of a PCMP (plant... 0.04 Orthogroups_2024-Update
MA_42343g0010 No alias (at4g02750 : 579.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_658463g0010 No alias (at4g02750 : 623.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_771696g0010 No alias (at1g20230 : 490.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_81436g0010 No alias (at4g21300 : 593.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_86894g0010 No alias (at3g12770 : 643.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_87646g0010 No alias (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_9360929g0010 No alias (at4g13650 : 669.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_99849g0020 No alias (at4g02750 : 535.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_9989604g0010 No alias (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... 0.07 Orthogroups_2024-Update
PSME_00001463-RA No alias (at4g33170 : 587.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00018763-RA No alias (at1g11290 : 389.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00036890-RA No alias (at1g11290 : 679.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00054324-RA No alias (at3g24000 : 542.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00057058-RA No alias (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
Potri.002G237100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G047800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Potri.005G187800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G097000 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Seita.2G031700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G293300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.4G216600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G044700.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.5G245900.1 No alias RNA editing factor *(MEF1) 0.05 Orthogroups_2024-Update
Seita.5G405500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G403900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.04 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc01g020340 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc02g079380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc02g093380 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc06g076900 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g006990 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.02 Orthogroups_2024-Update
Solyc11g017290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g064750 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Sopen01g038630 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen11g024580 No alias PPR repeat family 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 276 322
IPR002885 Pentatricopeptide_repeat 376 425
IPR002885 Pentatricopeptide_repeat 180 205
IPR002885 Pentatricopeptide_repeat 250 275
IPR002885 Pentatricopeptide_repeat 152 178
IPR002885 Pentatricopeptide_repeat 451 476
No external refs found!