1. Home
  2. Species
  3. Brachypodium distachyon
  4. Sequence
  5. Bradi5g14060

Bradi5g14060


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0009347 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009347_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g14060
Cluster HCCA clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
HORVU2Hr1G084600.11 No alias mitochondrial transcript stability factor *(MTSF1) 0.03 Orthogroups_2024-Update
Seita.7G146100.1 No alias mitochondrial transcript stability factor *(MTSF1) 0.04 Orthogroups_2024-Update
Sobic.006G128400.1 No alias mitochondrial transcript stability factor *(MTSF1) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016830 carbon-carbon lyase activity IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 777 810
IPR002885 Pentatricopeptide_repeat 336 368
IPR002885 Pentatricopeptide_repeat 673 704
IPR002885 Pentatricopeptide_repeat 425 448
IPR002885 Pentatricopeptide_repeat 173 190
IPR002885 Pentatricopeptide_repeat 205 235
IPR002885 Pentatricopeptide_repeat 853 879
IPR002885 Pentatricopeptide_repeat 606 655
IPR002885 Pentatricopeptide_repeat 711 759
IPR002885 Pentatricopeptide_repeat 520 569
IPR002885 Pentatricopeptide_repeat 450 499
IPR002885 Pentatricopeptide_repeat 270 318
IPR002885 Pentatricopeptide_repeat 891 934
No external refs found!