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  5. Bradi5g17270

Bradi5g17270


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_42_0001272 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001272_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g17270
Cluster HCCA clusters: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
A4A49_09484 No alias polyadenylate-binding protein 4 0.03 Orthogroups_2024-Update
A4A49_31260 No alias nucleolin 2 0.05 Orthogroups_2024-Update
At2g44710 No alias At2g44720/F16B22.21 [Source:UniProtKB/TrEMBL;Acc:Q8RWQ1] 0.03 Orthogroups_2024-Update
Bradi1g28670 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Glyma.09G245000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Glyma.16G130000 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 Orthogroups_2024-Update
Glyma.18G248200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
MA_10436637g0010 No alias (at2g44710 : 405.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
MA_92056g0010 No alias (at2g44710 : 283.0) RNA-binding (RRM/RBD/RNP motifs)... 0.03 Orthogroups_2024-Update
PSME_00027127-RA No alias (at2g44710 : 289.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
PSME_00029244-RA No alias (at2g44710 : 322.0) RNA-binding (RRM/RBD/RNP motifs)... 0.04 Orthogroups_2024-Update
PSME_00035988-RA No alias (at2g44710 : 321.0) RNA-binding (RRM/RBD/RNP motifs)... 0.04 Orthogroups_2024-Update
Pp1s164_106V6 No alias rna binding 0.03 Orthogroups_2024-Update
Solyc02g062290 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g062180 No alias RNA binding protein, putative (AHRD V3.3 *** B9SKE9_RICCO) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 201 268
IPR000504 RRM_dom 378 441
IPR000504 RRM_dom 281 346
No external refs found!