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  5. Bradi5g18460

Bradi5g18460


Description : high mobility group B3


Gene families : OG_42_0000453 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000453_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g18460
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
A4A49_40059 No alias high mobility group b protein 1 0.03 Orthogroups_2024-Update
GRMZM2G125648 No alias high-mobility group box 6 0.03 Orthogroups_2024-Update
GRMZM2G145968 No alias high mobility group B3 0.02 Orthogroups_2024-Update
Glyma.04G016800 No alias high mobility group B2 0.04 Orthogroups_2024-Update
Glyma.05G128900 No alias HMG-box (high mobility group) DNA-binding family protein 0.03 Orthogroups_2024-Update
Glyma.06G017100 No alias high mobility group B2 0.02 Orthogroups_2024-Update
Glyma.09G198300 No alias high mobility group B2 0.06 Orthogroups_2024-Update
Glyma.16G116300 No alias high mobility group B2 0.02 Orthogroups_2024-Update
MA_10176251g0010 No alias (original description: no original description) 0.02 Orthogroups_2024-Update
MA_10436440g0030 No alias (at3g51880 : 87.4) Encodes a protein belonging to the... 0.02 Orthogroups_2024-Update
Sobic.004G285900.3 No alias DNA bending architectural protein *(HMG-B) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004564 beta-fructofuranosidase activity IEP Predicted GO
MF GO:0004575 sucrose alpha-glucosidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0015926 glucosidase activity IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0090599 alpha-glucosidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 27 87
No external refs found!