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  5. Bradi5g18540

Bradi5g18540


Description : Stabilizer of iron transporter SufD / Polynucleotidyl transferase


Gene families : OG_42_0000134 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g18540
Cluster HCCA clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
109987 No alias Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.02 Orthogroups_2024-Update
Glyma.02G111600 No alias Argonaute family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G095300.15 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
Kfl00085_0250 kfl00085_0250_v1.... (at1g48410 : 963.0) Encodes an RNA Slicer that... 0.02 Orthogroups_2024-Update
MA_118377g0010 No alias (at1g48410 : 1469.0) Encodes an RNA Slicer that... 0.04 Orthogroups_2024-Update
PSME_00007270-RA No alias (at2g27040 : 897.0) AGO4 is a member of a class of... 0.03 Orthogroups_2024-Update
Potri.016G024200 No alias Argonaute family protein 0.05 Orthogroups_2024-Update
Pp1s173_134V6 No alias argonaute protein group 0.04 Orthogroups_2024-Update
Pp1s28_182V6 No alias argonaute protein group 0.02 Orthogroups_2024-Update
Seita.1G378700.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.04 Orthogroups_2024-Update
Sobic.006G215000.1 No alias siRNA-binding factor *(AGO2) of non-canonical RdDM pathway 0.03 Orthogroups_2024-Update
Sobic.009G003700.1 No alias miRNA recruiting factor (AGO) of RNA-induced silencing... 0.04 Orthogroups_2024-Update
Sobic.009G259900.1 No alias siRNA-integrating factor *(AGO) 0.02 Orthogroups_2024-Update
Sopen01g004450 No alias Piwi domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR032474 Argonaute_N 234 372
IPR014811 ArgoL1 382 431
IPR024357 Argonaut_Gly-rich 111 215
IPR003165 Piwi 725 1044
IPR032472 ArgoL2 574 620
IPR003100 PAZ_dom 450 563
IPR032473 Argonaute_Mid_dom 631 705
No external refs found!