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  5. Bradi5g20490

Bradi5g20490


Description : plastid transcriptionally active 17


Gene families : OG_42_0001486 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001486_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g20490
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
405512 No alias Cobalamin biosynthesis CobW-like protein 0.02 Orthogroups_2024-Update
Brara.F01078.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) 0.03 Orthogroups_2024-Update
Cre05.g234652 No alias plastid transcriptionally active 17 0.01 Orthogroups_2024-Update
Cre14.g630871 No alias plastid transcriptionally active 17 0.02 Orthogroups_2024-Update
HORVU6Hr1G086970.1 No alias cofactor of plastid-encoded RNA polymerase *(TAC17) 0.04 Orthogroups_2024-Update
Sopen08g024670 No alias PWWP domain 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011629 Cbl_biosynth_CobW-like_C 315 409
IPR003495 CobW/HypB/UreG_dom 73 258
No external refs found!