Bradi5g21560


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0009426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g21560
Cluster HCCA clusters: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G345667 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_77201g0010 No alias (at1g79490 : 895.0) embryo defective 2217 (EMB2217);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0016226 iron-sulfur cluster assembly IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0031163 metallo-sulfur cluster assembly IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
MF GO:0051536 iron-sulfur cluster binding IEP Predicted GO
MF GO:0051540 metal cluster binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 261 281
IPR002885 Pentatricopeptide_repeat 183 212
IPR002885 Pentatricopeptide_repeat 291 319
IPR002885 Pentatricopeptide_repeat 219 248
IPR002885 Pentatricopeptide_repeat 328 354
IPR033443 PPR_long 375 479
No external refs found!