Bradi5g21630


Description : Nucleic acid-binding, OB-fold-like protein


Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g21630
Cluster HCCA clusters: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
268639 No alias Nucleic acid-binding, OB-fold-like protein 0.07 Orthogroups_2024-Update
A4A49_60485 No alias 40s ribosomal protein s11 0.11 Orthogroups_2024-Update
At3g48930 No alias 40S ribosomal protein S11-1... 0.05 Orthogroups_2024-Update
At4g30800 No alias 40S ribosomal protein S11-2... 0.03 Orthogroups_2024-Update
Brara.A02200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Brara.B03705.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.F01642.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Brara.F02607.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Brara.I00599.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Cre12.g514500 No alias Nucleic acid-binding, OB-fold-like protein 0.16 Orthogroups_2024-Update
GRMZM2G019325 No alias ribosomal protein S11-beta 0.19 Orthogroups_2024-Update
GRMZM2G044800 No alias ribosomal protein S11-beta 0.14 Orthogroups_2024-Update
Glyma.09G094200 No alias ribosomal protein S11-beta 0.06 Orthogroups_2024-Update
Glyma.13G165200 No alias ribosomal protein S11-beta 0.16 Orthogroups_2024-Update
Glyma.17G105900 No alias ribosomal protein S11-beta 0.05 Orthogroups_2024-Update
HORVU2Hr1G099230.8 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
HORVU6Hr1G056610.7 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Kfl00435_0080 kfl00435_0080_v1.1 (p17093|rs11_soybn : 243.0) 40S ribosomal protein S11 -... 0.06 Orthogroups_2024-Update
LOC_Os04g52361 No alias ribosomal protein S17, putative, expressed 0.06 Orthogroups_2024-Update
MA_19350g0010 No alias (at3g48930 : 247.0) embryo defective 1080 (EMB1080);... 0.1 Orthogroups_2024-Update
Mp4g23360.1 No alias component RPS11 of SSU proteome 0.03 Orthogroups_2024-Update
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.09 Orthogroups_2024-Update
Potri.002G140400 No alias ribosomal protein S11-beta 0.1 Orthogroups_2024-Update
Potri.014G053300 No alias ribosomal protein S11-beta 0.11 Orthogroups_2024-Update
Potri.018G115400 No alias ribosomal protein S11-beta 0.08 Orthogroups_2024-Update
Pp1s21_269V6 No alias 40s ribosomal protein s11 0.22 Orthogroups_2024-Update
Pp1s30_89V6 No alias 40s ribosomal protein s11 0.11 Orthogroups_2024-Update
Pp1s51_307V6 No alias 40s ribosomal protein s11 0.13 Orthogroups_2024-Update
Pp1s79_58V6 No alias 40s ribosomal protein s11 0.1 Orthogroups_2024-Update
Seita.1G231100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Seita.7G157100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Seita.7G234800.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Sobic.004G213200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.12 Orthogroups_2024-Update
Sobic.006G138100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.18 Orthogroups_2024-Update
Sobic.006G213000.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.31 Orthogroups_2024-Update
Solyc06g073790 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.17 Orthogroups_2024-Update
Solyc06g073800 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.18 Orthogroups_2024-Update
Solyc12g042080 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.13 Orthogroups_2024-Update
Sopen06g030190 No alias Ribosomal protein S17 0.22 Orthogroups_2024-Update
Sopen12g021180 No alias Ribosomal protein S17 0.19 Orthogroups_2024-Update
evm.model.contig_3727.5 No alias (at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like... 0.25 Orthogroups_2024-Update
evm.model.tig00000551.22 No alias (p17093|rs11_soybn : 211.0) 40S ribosomal protein S11 -... 0.22 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
InterPro domains Description Start Stop
IPR000266 Ribosomal_S17/S11 74 142
IPR032440 Ribosomal_S11_N 4 72
No external refs found!