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  5. Bradi5g21820

Bradi5g21820


Description : FAR1-related sequence 5


Gene families : OG_42_0000075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g21820
Cluster HCCA clusters: Cluster_155

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G034868 No alias FRS (FAR1 Related Sequences) transcription factor family 0.02 Orthogroups_2024-Update
Glyma.02G273500 No alias FAR1-related sequence 3 0.04 Orthogroups_2024-Update
Glyma.06G314300 No alias far-red elongated hypocotyls 3 0.02 Orthogroups_2024-Update
Glyma.09G039300 No alias FAR1-related sequence 11 0.03 Orthogroups_2024-Update
LOC_Os04g25100 No alias transposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Potri.016G058500 No alias FAR1-related sequence 5 0.02 Orthogroups_2024-Update
Seita.1G189800.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Seita.2G388600.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.006G215050.1 No alias FRS/FRF-type transcription factor 0.03 Orthogroups_2024-Update
Solyc06g068210 No alias Protein FAR1-RELATED SEQUENCE 8 (AHRD V3.3 *** W9RSB0_9ROSA) 0.04 Orthogroups_2024-Update
Sopen03g040440 No alias FAR1 DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0004721 phosphoprotein phosphatase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005666 RNA polymerase III complex IEP Predicted GO
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006644 phospholipid metabolic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008654 phospholipid biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
BP GO:0016311 dephosphorylation IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1990234 transferase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 391 485
IPR004330 FAR1_DNA_bnd_dom 211 293
IPR007527 Znf_SWIM 660 700
No external refs found!