Bradi5g23854

Description : photosystem II reaction center protein B

Gene families : OG_42_0002336 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002336_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi5g23854
Cluster	HCCA clusters: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
137729	No alias	photosystem II reaction center protein B	0.03	Orthogroups_2024-Update
Bradi1g05740	No alias	photosystem II reaction center protein B	0.04	Orthogroups_2024-Update
Bradi3g27286	No alias	photosystem II reaction center protein B	0.03	Orthogroups_2024-Update
Bradi5g09702	No alias	photosystem II reaction center protein B	0.05	Orthogroups_2024-Update
HORVU6Hr1G049390.3	No alias	component *(PsbB/CP47) of PS-II reaction center complex	0.02	Orthogroups_2024-Update
Seita.J014000.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.003G169100.1	No alias	component *(PsbB/CP47) of PS-II reaction center complex	0.03	Orthogroups_2024-Update
Sobic.003G172200.1	No alias	Unknown function	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009521	photosystem	IEA	InterProScan predictions
BP	GO:0009767	photosynthetic electron transport chain	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016168	chlorophyll binding	IEA	InterProScan predictions
BP	GO:0019684	photosynthesis, light reaction	IEA	InterProScan predictions
BP	GO:0022900	electron transport chain	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044436	thylakoid part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046906	tetrapyrrole binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
BP	GO:0055114	oxidation-reduction process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005811	lipid droplet	IEP	Predicted GO
BP	GO:0006811	ion transport	IEP	Predicted GO
MF	GO:0009055	electron transfer activity	IEP	Predicted GO
CC	GO:0009523	photosystem II	IEP	Predicted GO
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Predicted GO
MF	GO:0015077	monovalent inorganic cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Predicted GO
BP	GO:0015672	monovalent inorganic cation transport	IEP	Predicted GO
BP	GO:0015979	photosynthesis	IEP	Predicted GO
CC	GO:0031360	intrinsic component of thylakoid membrane	IEP	Predicted GO
CC	GO:0031361	integral component of thylakoid membrane	IEP	Predicted GO
CC	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)	IEP	Predicted GO
BP	GO:0098655	cation transmembrane transport	IEP	Predicted GO
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predicted GO
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000932	PS_antenna-like	1	331

External Links

No external refs found!