1. Home
  2. Species
  3. Brachypodium distachyon
  4. Sequence
  5. Bradi5g24960

Bradi5g24960


Description : RP non-ATPase subunit 8A


Gene families : OG_42_0004886 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004886_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brachypodium release: Bradi5g24960
Cluster HCCA clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
Cre06.g278256 No alias Mov34/MPN/PAD-1 family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G110590.1 No alias regulatory component *(RPN8) of 26S proteasome 0.04 Orthogroups_2024-Update
Sobic.006G252200.1 No alias regulatory component *(RPN8) of 26S proteasome 0.04 Orthogroups_2024-Update
Sopen01g003890 No alias Maintenance of mitochondrial structure and function 0.04 Orthogroups_2024-Update
evm.model.tig00000403.78 No alias (at3g11270 : 381.0) maternal effect embryo arrest 34... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000502 proteasome complex IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005047 signal recognition particle binding IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005786 signal recognition particle, endoplasmic reticulum targeting IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006605 protein targeting IEP Predicted GO
BP GO:0006612 protein targeting to membrane IEP Predicted GO
BP GO:0006613 cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008312 7S RNA binding IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030942 endoplasmic reticulum signal peptide binding IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
BP GO:0043044 ATP-dependent chromatin remodeling IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0045047 protein targeting to ER IEP Predicted GO
CC GO:0048500 signal recognition particle IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0070972 protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Predicted GO
BP GO:0072657 protein localization to membrane IEP Predicted GO
BP GO:0090150 establishment of protein localization to membrane IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000555 JAMM/MPN+_dom 14 124
IPR024969 Rpn11/EIF3F_C 174 285
No external refs found!