Bradi5g25767

Description : auxin response factor 6

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brachypodium release: Bradi5g25767
Cluster	HCCA clusters: Cluster_238

Target	Alias	Description	ECC score	Gene Family Method
At1g19850	No alias	Auxin response factor [Source:UniProtKB/TrEMBL;Acc:A0A178W993]	0.03	Orthogroups_2024-Update
At4g23980	No alias	Auxin response factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9XED8]	0.02	Orthogroups_2024-Update
Bradi2g16610	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Bradi3g03407	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Brara.A02353.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.F02033.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Brara.H02379.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.02	Orthogroups_2024-Update
GRMZM2G056120	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
GRMZM5G874163	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.09G072200	No alias	Transcriptional factor B3 family protein /...	0.04	Orthogroups_2024-Update
Glyma.16G023600	No alias	auxin response factor 18	0.03	Orthogroups_2024-Update
HORVU7Hr1G051930.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os02g41800	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
MA_40335g0010	No alias	(at5g62000 : 752.0) Encodes an auxin response factor....	0.02	Orthogroups_2024-Update
Potri.003G163600	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Seita.4G240600.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
Seita.5G438100.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Seita.7G108100.1	No alias	ARF-type transcription factor	0.08	Orthogroups_2024-Update
Sobic.002G290600.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.004G037800.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.010G073600.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.04	Orthogroups_2024-Update
Solyc08g082630	No alias	Auxin Response Factor 9A	0.02	Orthogroups_2024-Update
evm.model.tig00020904.93	No alias	no hits & (original description: no original description)	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0007010	cytoskeleton organization	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016740	transferase activity	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	142	243
IPR010525	Auxin_resp	268	351
IPR033389	AUX/IAA_dom	731	825

External Links

No external refs found!

Bradi5g25767

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation