Sopen07g018750

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0001421 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001421_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen07g018750
Cluster	HCCA clusters: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
Solyc04g017990	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc09g050010	No alias	No description available	0.02	Orthogroups_2024-Update
Sopen05g013260	No alias	Retroviral aspartyl protease	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR005162	Retrotrans_gag_dom	204	300
IPR001878	Znf_CCHC	408	424
IPR000477	RT_dom	741	900

External Links

No external refs found!