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  5. Sopen07g019080

Sopen07g019080


Description : CRS1 / YhbY (CRM) domain


Gene families : OG_42_0000921 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000921_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g019080
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
20706 No alias CRS1 / YhbY (CRM) domain-containing protein 0.02 Orthogroups_2024-Update
Bradi2g17390 No alias CRS1 / YhbY (CRM) domain-containing protein 0.04 Orthogroups_2024-Update
Bradi3g21852 No alias ortholog of maize chloroplast splicing factor CRS1 0.02 Orthogroups_2024-Update
Bradi4g14900 No alias CRM family member 3A 0.05 Orthogroups_2024-Update
Bradi4g28800 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Brara.A02935.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.K00876.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.07G092300 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Glyma.19G014000 No alias CRM family member 2 0.03 Orthogroups_2024-Update
HORVU1Hr1G083550.4 No alias Unknown function 0.04 Orthogroups_2024-Update
Kfl00095_0160 kfl00095_0160_v1.1 (at3g18390 : 154.0) embryo defective 1865 (EMB1865);... 0.02 Orthogroups_2024-Update
LOC_Os05g47850 No alias chloroplastic group IIA intron splicing facilitator... 0.03 Orthogroups_2024-Update
LOC_Os11g37990 No alias chloroplastic group IIA intron splicing facilitator... 0.02 Orthogroups_2024-Update
MA_10432072g0010 No alias (at3g23070 : 659.0) Encodes a CRM domain protein CFM3a,... 0.02 Orthogroups_2024-Update
Potri.006G149000 No alias CRS1 / YhbY (CRM) domain-containing protein 0.08 Orthogroups_2024-Update
Potri.010G077100 No alias CRM family member 3A 0.03 Orthogroups_2024-Update
Potri.012G056100 No alias CRS1 / YhbY (CRM) domain-containing protein 0.03 Orthogroups_2024-Update
Pp1s70_29V6 No alias crm family member 3 0.03 Orthogroups_2024-Update
Seita.2G185900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G156100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G127900.1 No alias plastidial RNA splicing factor *(CFM2) 0.07 Orthogroups_2024-Update
Seita.8G170300.1 No alias plastidial RNA splicing factor *(CFM3) 0.03 Orthogroups_2024-Update
Sobic.002G181000.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.005G169600.1 No alias plastidial RNA splicing factor *(CFM3) 0.05 Orthogroups_2024-Update
Sobic.006G110200.2 No alias plastidial RNA splicing factor *(CFM2) 0.06 Orthogroups_2024-Update
Sobic.009G223200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc02g087250 No alias Chloroplastic group IIA intron splicing facilitator... 0.08 Orthogroups_2024-Update
Solyc03g119450 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.06 Orthogroups_2024-Update
Solyc07g039500 No alias Chloroplastic group IIA intron splicing facilitator CRS1... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 423 507
IPR001890 RNA-binding_CRM 636 723
IPR001890 RNA-binding_CRM 228 311
No external refs found!