Sopen07g019130

Description : Oligonucleotide/oligosaccharide-binding (OB)-fold

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen07g019130
Cluster	HCCA clusters: Cluster_122

Target	Alias	Description	ECC score	Gene Family Method
A4A49_00869	No alias	putative pre-mrna-splicing factor atp-dependent rna...	0.03	Orthogroups_2024-Update
At1g33390	No alias	FAS4 [Source:UniProtKB/TrEMBL;Acc:A0A178WIP4]	0.04	Orthogroups_2024-Update
At3g62310	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.04	Orthogroups_2024-Update
Bradi2g06800	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Bradi4g16730	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Brara.C02356.1	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	Orthogroups_2024-Update
HORVU7Hr1G097070.1	No alias	RNA helicase *(Prp16)	0.02	Orthogroups_2024-Update
Mp1g21130.1	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	Orthogroups_2024-Update
Seita.3G152600.1	No alias	RNA helicase *(Prp2)	0.02	Orthogroups_2024-Update
Sobic.004G246000.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Solyc10g076910	No alias	ATP-dependent RNA helicase, putative (AHRD V3.3 *** B9SMB4_RICCO)	0.03	Orthogroups_2024-Update
evm.model.contig_450.3	No alias	(at3g62310 : 264.0) RNA helicase family protein;...	0.02	Orthogroups_2024-Update
evm.model.contig_524.2	No alias	(at3g62310 : 724.0) RNA helicase family protein;...	0.02	Orthogroups_2024-Update
evm.model.tig00021589.29	No alias	(at3g26560 : 868.0) ATP-dependent RNA helicase,...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003029	S1_domain	237	304
IPR011545	DEAD/DEAH_box_helicase_dom	544	693
IPR011709	DUF1605	1075	1150
IPR001650	Helicase_C	737	867
IPR007502	Helicase-assoc_dom	929	1017

External Links

No external refs found!