Sopen07g021720

Description : PPR repeat family

Gene families : OG_42_0009809 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009809_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen07g021720
Cluster	HCCA clusters: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sobic.007G033900.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Sobic.007G039856.1	No alias	Unknown function	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	194	223
IPR002885	Pentatricopeptide_repeat	268	292
IPR002885	Pentatricopeptide_repeat	469	490
IPR002885	Pentatricopeptide_repeat	164	192
IPR002885	Pentatricopeptide_repeat	293	339
IPR002885	Pentatricopeptide_repeat	393	440
IPR032867	DYW_dom	568	690

External Links

No external refs found!