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  5. Sopen07g021760

Sopen07g021760


Description : Glycosyl hydrolases family 28


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g021760
Cluster HCCA clusters: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
Bradi1g53430 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.B03479.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.I04239.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Glyma.09G071500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Kfl00636_0040 kfl00636_0040_v1.1 (at3g42950 : 341.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Sobic.010G005000.1 No alias EC_3.2 glycosylase 0.05 Orthogroups_2024-Update
Solyc03g117750 No alias Pectin lyase-like superfamily protein (AHRD V3.3 *** AT1G19170.1) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 172 454
No external refs found!