Sopen07g021880

Description : Auxin response factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen07g021880
Cluster	HCCA clusters: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
A4A49_00654	No alias	auxin response factor 19	0.02	Orthogroups_2024-Update
Brara.E00126.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Brara.H02379.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
GRMZM2G017187	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
GRMZM2G317900	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
GRMZM5G874163	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Glyma.05G221300	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
LOC_Os05g48870	No alias	auxin response factor 15, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g47150	No alias	auxin response factor 18, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00047903-RA	No alias	(at4g30080 : 523.0) Involved in root cap cell...	0.02	Orthogroups_2024-Update
Potri.005G236700	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Potri.010G223200	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
Seita.8G135700.1	No alias	ARF-type transcription factor	0.02	Orthogroups_2024-Update
Solyc09g007810	No alias	Auxin Response Factor 16A	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	126	227
IPR010525	Auxin_resp	252	334
IPR033389	AUX/IAA_dom	1005	1103

External Links

No external refs found!

Sopen07g021880

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation