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  5. Sopen07g021900

Sopen07g021900


Description : DEAD/DEAH box helicase


Gene families : OG_42_0000879 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000879_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g021900
Cluster HCCA clusters: Cluster_333

Target Alias Description ECC score Gene Family Method Actions
Cre03.g156150 No alias DEA(D/H)-box RNA helicase family protein 0.03 Orthogroups_2024-Update
Cre07.g314900 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
GRMZM5G897976 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 Orthogroups_2024-Update
Mp6g05260.1 No alias DEAD-box ATP-dependent RNA helicase 17 OS=Oryza sativa... 0.02 Orthogroups_2024-Update
Sobic.001G051500.1 No alias regulatory RNA helicase *(RH27/RH51) of miRNA biogenesis pathway 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025313 DUF4217 506 566
IPR011545 DEAD/DEAH_box_helicase_dom 53 243
IPR001650 Helicase_C 319 442
No external refs found!