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  5. Sopen07g023350

Sopen07g023350


Description : DEAD/DEAH box helicase


Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g023350
Cluster HCCA clusters: Cluster_296

Target Alias Description ECC score Gene Family Method Actions
10677 No alias DEAD box RNA helicase (RH3) 0.04 Orthogroups_2024-Update
99603 No alias putative mitochondrial RNA helicase 2 0.04 Orthogroups_2024-Update
AC198418.3_FG005 No alias DEAD box RNA helicase (RH3) 0.02 Orthogroups_2024-Update
Bradi1g03180 No alias DEAD box RNA helicase (RH3) 0.04 Orthogroups_2024-Update
Bradi4g02000 No alias putative mitochondrial RNA helicase 1 0.04 Orthogroups_2024-Update
Bradi4g35490 No alias DEAD box RNA helicase (PRH75) 0.04 Orthogroups_2024-Update
Glyma.02G281200 No alias putative mitochondrial RNA helicase 2 0.06 Orthogroups_2024-Update
Glyma.20G089600 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
Glyma.20G152200 No alias DEAD box RNA helicase (PRH75) 0.03 Orthogroups_2024-Update
HORVU5Hr1G011460.1 No alias group-II intron splicing RNA helicase *(PMH) 0.05 Orthogroups_2024-Update
PSME_00014810-RA No alias (q41382|rh7_spiol : 645.0) DEAD-box ATP-dependent RNA... 0.02 Orthogroups_2024-Update
Potri.005G000100 No alias DEAD box RNA helicase (RH3) 0.03 Orthogroups_2024-Update
Potri.005G000500 No alias DEAD box RNA helicase (RH3) 0.02 Orthogroups_2024-Update
Seita.9G027200.1 No alias group-II intron splicing RNA helicase *(RH3) 0.05 Orthogroups_2024-Update
Sobic.001G028100.1 No alias group-II intron splicing RNA helicase *(RH3) 0.04 Orthogroups_2024-Update
Sobic.008G165900.1 No alias group-II intron splicing RNA helicase *(PMH) 0.02 Orthogroups_2024-Update
Solyc07g044760 No alias RNA helicase DEAD23 0.03 Orthogroups_2024-Update
evm.model.contig_3385.6 No alias (at5g26742 : 365.0) embryo defective 1138 (emb1138);... 0.01 Orthogroups_2024-Update
evm.model.tig00000093.151 No alias (at5g26742 : 291.0) embryo defective 1138 (emb1138);... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 197 305
IPR011545 DEAD/DEAH_box_helicase_dom 2 157
No external refs found!