Sopen07g023790

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen07g023790
Cluster	HCCA clusters: Cluster_214

Target	Alias	Description	ECC score	Gene Family Method
A4A49_58689	No alias	heterogeneous nuclear ribonucleoprotein 1	0.03	Orthogroups_2024-Update
At4g26650	No alias	AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569]	0.03	Orthogroups_2024-Update
Brara.K00130.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os02g12850	No alias	RNA recognition motif containing protein, expressed	0.02	Orthogroups_2024-Update
PSME_00023415-RA	No alias	(at5g40490 : 216.0) RNA-binding (RRM/RBD/RNP motifs)...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	17	74
IPR000504	RRM_dom	105	174

External Links

No external refs found!