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  5. Sopen07g024600

Sopen07g024600


Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)


Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g024600
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
406315 No alias glycine-rich RNA-binding protein 4 0.03 Orthogroups_2024-Update
At5g61030 No alias GR-RBP3 [Source:UniProtKB/TrEMBL;Acc:A0A178UBT5] 0.03 Orthogroups_2024-Update
Bradi1g02570 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.02 Orthogroups_2024-Update
GRMZM2G003897 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
GRMZM2G042118 No alias glycine-rich RNA-binding protein 2 0.02 Orthogroups_2024-Update
Glyma.06G263200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Orthogroups_2024-Update
Glyma.11G117600 No alias cold, circadian rhythm, and rna binding 2 0.02 Orthogroups_2024-Update
Glyma.17G078400 No alias glycine-rich RNA-binding protein 3 0.03 Orthogroups_2024-Update
Glyma.20G113200 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.03 Orthogroups_2024-Update
HORVU5Hr1G089190.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os07g36490 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
Sobic.006G073300.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc02g088790 No alias RNA-binding protein (AHRD V3.3 *** Q941H9_TOBAC) 0.02 Orthogroups_2024-Update
Solyc10g081180 No alias RNA-binding protein (AHRD V3.3 *-* Q941H9_TOBAC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000504 RRM_dom 42 112
No external refs found!