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  5. Sopen07g028030

Sopen07g028030


Description : PPR repeat


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g028030
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
420699 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
428276 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
55637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
At4g01990 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Orthogroups_2024-Update
Brara.E02579.1 No alias RNA editing factor *(POCO) 0.02 Orthogroups_2024-Update
Brara.I01168.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G135940 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G176700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os10g35730 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os12g07260 No alias PPR repeat domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_29806g0010 No alias (at1g60770 : 282.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00030176-RA No alias (at1g02150 : 296.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.013G132700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 324 351
IPR002885 Pentatricopeptide_repeat 361 387
IPR002885 Pentatricopeptide_repeat 255 275
IPR002885 Pentatricopeptide_repeat 394 417
IPR002885 Pentatricopeptide_repeat 181 228
No external refs found!