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  5. Sopen07g028040

Sopen07g028040


Description : PPR repeat


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g028040
Cluster HCCA clusters: Cluster_336

Target Alias Description ECC score Gene Family Method Actions
At4g01990 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Orthogroups_2024-Update
Brara.I01168.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G076950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G016360.4 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os10g35730 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
Seita.9G203000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G330800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc07g054090 No alias Pentatricopeptide repeat-containing protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 398 422
IPR002885 Pentatricopeptide_repeat 366 392
IPR002885 Pentatricopeptide_repeat 189 218
IPR002885 Pentatricopeptide_repeat 329 356
IPR002885 Pentatricopeptide_repeat 155 183
No external refs found!