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  5. Sopen07g028620

Sopen07g028620


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000434 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000434_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g028620
Cluster HCCA clusters: Cluster_435

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g28680 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g05380 No alias retrotransposon protein, putative, unclassified, expressed 0.01 Orthogroups_2024-Update
Sopen00g008040 No alias Integrase core domain 0.01 Orthogroups_2024-Update
Sopen01g025320 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen02g006180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g024440 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen03g018080 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g007160 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen04g008310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g011200 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g025160 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen06g013240 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g017710 No alias gag-polypeptide of LTR copia-type 0.02 Orthogroups_2024-Update
Sopen06g032590 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g011970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g017780 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g017790 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen11g010500 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025724 GAG-pre-integrase_dom 740 809
IPR013103 RVT_2 1217 1458
IPR001878 Znf_CCHC 282 297
IPR001584 Integrase_cat-core 824 937
No external refs found!