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  5. Sopen07g029920

Sopen07g029920


Description : Retinal pigment epithelial membrane protein


Gene families : OG_42_0000424 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g029920
Cluster HCCA clusters: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
272067 No alias carotenoid cleavage dioxygenase 1 0.02 Orthogroups_2024-Update
A4A49_18325 No alias carotenoid 9,10(9',10')-cleavage dioxygenase 1 0.04 Orthogroups_2024-Update
A4A49_34874 No alias putative carotenoid cleavage dioxygenase 4, chloroplastic 0.05 Orthogroups_2024-Update
At3g63520 No alias Carotenoid 9,10(9',10')-cleavage dioxygenase 1... 0.02 Orthogroups_2024-Update
At4g19170 No alias Probable carotenoid cleavage dioxygenase 4,... 0.03 Orthogroups_2024-Update
Bradi3g52680 No alias nine-cis-epoxycarotenoid dioxygenase 4 0.02 Orthogroups_2024-Update
Bradi4g00335 No alias carotenoid cleavage dioxygenase 1 0.02 Orthogroups_2024-Update
Brara.I04484.1 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.02 Orthogroups_2024-Update
Glyma.01G154900 No alias nine-cis-epoxycarotenoid dioxygenase 4 0.03 Orthogroups_2024-Update
Glyma.12G236700 No alias carotenoid cleavage dioxygenase 1 0.02 Orthogroups_2024-Update
HORVU5Hr1G092850.2 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
MA_10425950g0010 No alias (at4g19170 : 581.0) chloroplast-targeted member of a... 0.03 Orthogroups_2024-Update
MA_10428505g0010 No alias (at3g14440 : 285.0) Encodes ... 0.02 Orthogroups_2024-Update
MA_10434448g0010 No alias (at3g14440 : 592.0) Encodes ... 0.02 Orthogroups_2024-Update
MA_90573g0010 No alias (at4g19170 : 622.0) chloroplast-targeted member of a... 0.02 Orthogroups_2024-Update
Mp7g12990.1 No alias carotenoid cleavage dioxygenase (CCD1) 0.03 Orthogroups_2024-Update
PSME_00033517-RA No alias (at4g19170 : 642.0) chloroplast-targeted member of a... 0.02 Orthogroups_2024-Update
Potri.001G265600 No alias carotenoid cleavage dioxygenase 1 0.03 Orthogroups_2024-Update
Potri.003G176300 No alias nine-cis-epoxycarotenoid dioxygenase 6 0.02 Orthogroups_2024-Update
Seita.3G391000.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.03 Orthogroups_2024-Update
Solyc07g056570 No alias notabilis 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 132 594
No external refs found!