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  5. Sopen07g031310

Sopen07g031310


Description : WD domain, G-beta repeat


Gene families : OG_42_0000717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen07g031310
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
101888 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
141846 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
A4A49_27287 No alias protein spa1-related 3 0.03 Orthogroups_2024-Update
A4A49_35805 No alias e3 ubiquitin-protein ligase cop1 0.05 Orthogroups_2024-Update
At1g53090 No alias SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0] 0.06 Orthogroups_2024-Update
Bradi2g15900 No alias SPA (suppressor of phyA-105) protein family 0.02 Orthogroups_2024-Update
Bradi2g48657 No alias SPA1-related 4 0.03 Orthogroups_2024-Update
Bradi3g57667 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.A03144.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.05 Orthogroups_2024-Update
Brara.C02328.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.05 Orthogroups_2024-Update
Brara.E00142.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
GRMZM2G020291 No alias SPA (suppressor of phyA-105) protein family 0.02 Orthogroups_2024-Update
GRMZM2G061602 No alias SPA1-related 4 0.03 Orthogroups_2024-Update
Glyma.02G267800 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.05G214900 No alias SPA1-related 2 0.02 Orthogroups_2024-Update
Glyma.07G058200 No alias SPA (suppressor of phyA-105) protein family 0.02 Orthogroups_2024-Update
Glyma.12G224600 No alias SPA1-related 3 0.05 Orthogroups_2024-Update
Glyma.13G276700 No alias SPA1-related 3 0.06 Orthogroups_2024-Update
Glyma.14G049700 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G090080.2 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
HORVU3Hr1G068840.7 No alias component *(SPA) of substrate adaptor module of... 0.05 Orthogroups_2024-Update
HORVU6Hr1G079680.3 No alias component *(COP1) of COP1-SPA light signal transduction... 0.04 Orthogroups_2024-Update
LOC_Os02g53140 No alias COP1, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g49590 No alias suppressor of phythchrome A, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00014824-RA No alias (at2g32950 : 499.0) Represses photomorphogenesis and... 0.03 Orthogroups_2024-Update
PSME_00014826-RA No alias (at2g32950 : 186.0) Represses photomorphogenesis and... 0.02 Orthogroups_2024-Update
Potri.001G399600 No alias SPA1-related 3 0.02 Orthogroups_2024-Update
Potri.004G002700 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.014G095300 No alias SPA (suppressor of phyA-105) protein family 0.02 Orthogroups_2024-Update
Potri.014G159300 No alias Transducin/WD40 repeat-like superfamily protein 0.07 Orthogroups_2024-Update
Pp1s154_52V6 No alias ubiquitin ligase protein 0.04 Orthogroups_2024-Update
Pp1s180_148V6 No alias ubiquitin ligase protein 0.04 Orthogroups_2024-Update
Pp1s264_64V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Pp1s30_295V6 No alias ubiquitin ligase protein 0.04 Orthogroups_2024-Update
Pp1s81_234V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Pp1s86_153V6 No alias ubiquitin ligase protein 0.02 Orthogroups_2024-Update
Seita.3G139600.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.02 Orthogroups_2024-Update
Seita.5G302800.1 No alias component *(SPA) of substrate adaptor module of... 0.04 Orthogroups_2024-Update
Sobic.003G282000.1 No alias component *(SPA) of substrate adaptor module of... 0.03 Orthogroups_2024-Update
Sobic.004G312600.1 No alias component *(COP1) of COP1-SPA light signal transduction... 0.06 Orthogroups_2024-Update
Sobic.009G238000.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.05 Orthogroups_2024-Update
Solyc07g063120 No alias Ubiquitin ligase protein cop1, putative (AHRD V3.3 ***... 0.19 Orthogroups_2024-Update
Solyc12g005950 No alias COP1 homolog 0.07 Orthogroups_2024-Update
Solyc12g013840 No alias SPA1-related 3 (AHRD V3.3 *** AT3G15354.3) 0.09 Orthogroups_2024-Update
evm.model.tig00020964.35 No alias (at2g32950 : 280.0) Represses photomorphogenesis and... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 658 692
No external refs found!