Sopen07g033940

Description : PPR repeat family

Gene families : OG_42_0014704 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0014704_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen07g033940
Cluster	HCCA clusters: Cluster_185

Target	Alias	Description	ECC score	Gene Family Method	Actions
Potri.001G369900	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.04	Orthogroups_2024-Update
Solyc07g065730	No alias	Pentatricopeptide repeat-containing protein (AHRD V3.3...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	186	215
IPR002885	Pentatricopeptide_repeat	319	366
IPR002885	Pentatricopeptide_repeat	218	265
IPR002885	Pentatricopeptide_repeat	393	417
IPR002885	Pentatricopeptide_repeat	292	318
IPR002885	Pentatricopeptide_repeat	460	488
IPR032867	DYW_dom	493	616

External Links

No external refs found!