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  5. Sopen08g001440

Sopen08g001440


Description : C-5 cytosine-specific DNA methylase


Gene families : OG_42_0002722 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002722_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g001440
Cluster HCCA clusters: Cluster_150

Target Alias Description ECC score Gene Family Method Actions
At1g69770 No alias DNA (cytosine-5)-methyltransferase CMT3... 0.03 Orthogroups_2024-Update
Brara.A01011.1 No alias DNA chromomethylase *(CMT) 0.03 Orthogroups_2024-Update
Seita.9G300300.1 No alias DNA chromomethylase *(CMT) 0.02 Orthogroups_2024-Update
Solyc01g006100 No alias cytosine-5 DNA methyltransferase1L 0.03 Orthogroups_2024-Update
Solyc08g005400 No alias Cytosine-specific methyltransferase (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Solyc12g100330 No alias cytosine-5 DNA methyltransferase3L 0.03 Orthogroups_2024-Update
Sopen12g034960 No alias C-5 cytosine-specific DNA methylase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA InterProScan predictions
MF GO:0008168 methyltransferase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023780 Chromo_domain 631 671
IPR001025 BAH_dom 357 466
IPR001525 C5_MeTfrase 678 1039
No external refs found!