1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen08g002490

Sopen08g002490


Description : CCT motif


Gene families : OG_42_0000725 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000725_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g002490
Cluster HCCA clusters: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
102790 No alias CONSTANS-like 4 0.03 Orthogroups_2024-Update
102902 No alias CONSTANS-like 5 0.03 Orthogroups_2024-Update
185898 No alias CONSTANS-like 4 0.02 Orthogroups_2024-Update
A4A49_03485 No alias zinc finger protein constans-like 4 0.05 Orthogroups_2024-Update
A4A49_15211 No alias zinc finger protein constans-like 4 0.03 Orthogroups_2024-Update
A4A49_38110 No alias zinc finger protein constans-like 2 0.04 Orthogroups_2024-Update
A4A49_38205 No alias zinc finger protein constans-like 5 0.07 Orthogroups_2024-Update
At2g24790 No alias Zinc finger protein CONSTANS-LIKE 3... 0.03 Orthogroups_2024-Update
At3g02380 No alias Zinc finger protein CONSTANS-LIKE 2... 0.03 Orthogroups_2024-Update
At5g24930 No alias Zinc finger protein CONSTANS-LIKE 4... 0.05 Orthogroups_2024-Update
At5g57660 No alias Zinc finger protein CONSTANS-LIKE 5... 0.03 Orthogroups_2024-Update
Bradi1g31280 No alias CONSTANS-like 4 0.02 Orthogroups_2024-Update
Bradi1g43670 No alias CONSTANS-like 2 0.04 Orthogroups_2024-Update
Brara.A03895.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.06 Orthogroups_2024-Update
Brara.B00625.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.04 Orthogroups_2024-Update
Brara.B01196.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.04 Orthogroups_2024-Update
Brara.C02983.1 No alias floral promoter *(CONSTANS) 0.02 Orthogroups_2024-Update
Brara.D01502.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Cre06.g278159 No alias CONSTANS-like 3 0.02 Orthogroups_2024-Update
GRMZM2G095598 No alias CONSTANS-like 3 0.03 Orthogroups_2024-Update
GRMZM2G148772 No alias CONSTANS-like 5 0.03 Orthogroups_2024-Update
GRMZM2G405368 No alias CONSTANS-like 2 0.03 Orthogroups_2024-Update
Glyma.04G058900 No alias CONSTANS-like 4 0.04 Orthogroups_2024-Update
Glyma.08G255200 No alias CONSTANS-like 2 0.03 Orthogroups_2024-Update
Glyma.13G093800 No alias CONSTANS-like 5 0.04 Orthogroups_2024-Update
Glyma.17G066600 No alias CONSTANS-like 5 0.03 Orthogroups_2024-Update
Glyma.18G278100 No alias CONSTANS-like 2 0.04 Orthogroups_2024-Update
Kfl00103_0190 kfl00103_0190_v1.... (at5g24930 : 204.0) CONSTANS-like 4 (COL4); FUNCTIONS... 0.03 Orthogroups_2024-Update
LOC_Os02g39710 No alias CCT/B-box zinc finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g42020 No alias CCT/B-box zinc finger protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os06g44450 No alias CCT/B-box zinc finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g06464 No alias CCT/B-box zinc finger protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00005790-RA No alias (at5g24930 : 126.0) CONSTANS-like 4 (COL4); FUNCTIONS... 0.03 Orthogroups_2024-Update
PSME_00015948-RA No alias (at5g24930 : 259.0) CONSTANS-like 4 (COL4); FUNCTIONS... 0.03 Orthogroups_2024-Update
Pp1s364_5V6 No alias col3 gene for putative COSTANS-like 3 protein COL3 0.02 Orthogroups_2024-Update
Pp1s371_27V6 No alias col1 gene for putative CONSTANS-like 1 protein COL1 0.02 Orthogroups_2024-Update
Pp1s97_109V6 No alias col2 gene for putative CONSTANS-like 2 protein COL2 0.03 Orthogroups_2024-Update
Seita.1G228800.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.05 Orthogroups_2024-Update
Sobic.004G211200.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.06 Orthogroups_2024-Update
Sobic.006G135100.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Sobic.010G214000.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.05 Orthogroups_2024-Update
Solyc07g006630 No alias CONSTANS-like protein (AHRD V3.3 *** B2MW87_SOLLC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000315 Znf_B-box 53 98
IPR010402 CCT_domain 284 326
No external refs found!