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  5. Sopen08g003170

Sopen08g003170


Description : Hyaluronan / mRNA binding family


Gene families : OG_42_0001353 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g003170
Cluster HCCA clusters: Cluster_330

Target Alias Description ECC score Gene Family Method Actions
Bradi2g18860 No alias Hyaluronan / mRNA binding family 0.05 Orthogroups_2024-Update
Bradi2g48500 No alias Hyaluronan / mRNA binding family 0.08 Orthogroups_2024-Update
Brara.A00883.1 No alias regulatory protein *(RGG) of mRNA quality control 0.07 Orthogroups_2024-Update
Brara.B02951.1 No alias regulatory protein *(RGG) of mRNA quality control 0.06 Orthogroups_2024-Update
Brara.C04556.1 No alias regulatory protein *(RGG) of mRNA quality control 0.09 Orthogroups_2024-Update
Brara.H00932.1 No alias regulatory protein *(RGG) of mRNA quality control 0.08 Orthogroups_2024-Update
Brara.I01982.1 No alias regulatory protein *(RGG) of mRNA quality control 0.06 Orthogroups_2024-Update
GRMZM2G116282 No alias Hyaluronan / mRNA binding family 0.04 Orthogroups_2024-Update
Glyma.03G110300 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update
Glyma.07G114600 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update
Glyma.09G243200 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update
Glyma.18G251400 No alias Hyaluronan / mRNA binding family 0.04 Orthogroups_2024-Update
HORVU1Hr1G080980.2 No alias regulatory protein *(RGG) of mRNA quality control 0.03 Orthogroups_2024-Update
HORVU3Hr1G068500.2 No alias regulatory protein *(RGG) of mRNA quality control 0.04 Orthogroups_2024-Update
LOC_Os01g41880 No alias hyaluronan/mRNA binding family domain containing... 0.02 Orthogroups_2024-Update
MA_141447g0010 No alias (at4g16830 : 115.0) Hyaluronan / mRNA binding family;... 0.02 Orthogroups_2024-Update
MA_9567870g0010 No alias (at4g17520 : 147.0) Hyaluronan / mRNA binding family;... 0.05 Orthogroups_2024-Update
PSME_00012836-RA No alias (at4g16830 : 146.0) Hyaluronan / mRNA binding family;... 0.05 Orthogroups_2024-Update
Potri.001G153000 No alias Hyaluronan / mRNA binding family 0.05 Orthogroups_2024-Update
Pp1s456_22V6 No alias contains ESTs AU070561(S3985),D23584(C3044) [Oryza... 0.04 Orthogroups_2024-Update
Seita.3G124100.1 No alias regulatory protein *(RGG) of mRNA quality control 0.04 Orthogroups_2024-Update
Seita.5G216700.1 No alias regulatory protein *(RGG) of mRNA quality control 0.07 Orthogroups_2024-Update
Seita.5G301000.1 No alias regulatory protein *(RGG) of mRNA quality control 0.02 Orthogroups_2024-Update
Sobic.003G211100.1 No alias regulatory protein *(RGG) of mRNA quality control 0.07 Orthogroups_2024-Update
Sobic.003G279800.1 No alias regulatory protein *(RGG) of mRNA quality control 0.07 Orthogroups_2024-Update
Sobic.009G253400.1 No alias regulatory protein *(RGG) of mRNA quality control 0.04 Orthogroups_2024-Update
Solyc08g007220 No alias Nuclear RNA binding protein-like (AHRD V3.3 *** Q38M48_SOLTU) 0.1 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 156 264
IPR019084 Stm1-like_N 1 73
No external refs found!