Sopen08g003220

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000411 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000411_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g003220
Cluster	HCCA clusters: Cluster_70

Target	Alias	Description	ECC score	Gene Family Method
At1g35530	No alias	DEAD/DEAH box RNA helicase family protein...	0.02	Orthogroups_2024-Update
Potri.013G109600	No alias	DEAD/DEAH box RNA helicase family protein	0.03	Orthogroups_2024-Update
Sopen04g026030	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen05g015750	No alias	hypothetical protein	0.03	Orthogroups_2024-Update
evm.model.tig00021350.23	No alias	(at1g35530 : 200.0) DEAD/DEAH box RNA helicase family...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	1280	1520
IPR025724	GAG-pre-integrase_dom	819	883
IPR001584	Integrase_cat-core	896	1011
IPR002182	NB-ARC	125	361

External Links

No external refs found!

Sopen08g003220

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation