1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen08g004540

Sopen08g004540


Description : B3 DNA binding domain


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g004540
Cluster HCCA clusters: Cluster_370

Target Alias Description ECC score Gene Family Method Actions
At1g01030 No alias NGA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3T3] 0.04 Orthogroups_2024-Update
Brara.C02344.1 No alias RAV/NGATHA-type transcription factor 0.02 Orthogroups_2024-Update
Brara.C03374.1 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.01G087500 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.03G262200 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082670.6 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
MA_246350g0010 No alias (at1g13260 : 168.0) Encodes an AP2/B3 domain... 0.02 Orthogroups_2024-Update
Mp2g22250.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Orthogroups_2024-Update
PSME_00032471-RA No alias (at1g68840 : 300.0) Rav2 is part of a complex that has... 0.04 Orthogroups_2024-Update
Seita.9G562700.1 No alias RAV/NGATHA-type transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 53 158
No external refs found!