Sopen08g004660

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g004660
Cluster	HCCA clusters: Cluster_114

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os04g53040	No alias	retrotransposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update
Sopen00g011290	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen01g006590	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen01g011350	No alias	Domain of unknown function (DUF4219)	0.03	Orthogroups_2024-Update
Sopen01g034220	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen02g015640	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen04g011060	No alias	gag-polypeptide of LTR copia-type	0.03	Orthogroups_2024-Update
Sopen05g015450	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen05g029770	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen09g011980	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen09g017310	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen09g022050	No alias	gag-polypeptide of LTR copia-type	0.04	Orthogroups_2024-Update
Sopen11g014180	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen12g022840	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
evm.model.contig_3460.4	No alias	no hits & (original description: no original description)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	414	657
IPR001584	Integrase_cat-core	54	165

External Links

No external refs found!