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  5. Sopen08g004730

Sopen08g004730


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g004730
Cluster HCCA clusters: Cluster_362

Target Alias Description ECC score Gene Family Method Actions
HORVU4Hr1G045110.1 No alias Unknown function 0.01 Orthogroups_2024-Update
LOC_Os01g23330 No alias retrotransposon, putative, centromere-specific, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g51430 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g26430 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc10g012010 No alias No description available 0.01 Orthogroups_2024-Update
Solyc11g063750 No alias No description available 0.02 Orthogroups_2024-Update
Solyc12g019380 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g011220 No alias Retroviral aspartyl protease 0.01 Orthogroups_2024-Update
Sopen01g024920 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen02g001860 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen02g004760 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen03g015220 No alias 5'-3' exonuclease, C-terminal SAM fold 0.01 Orthogroups_2024-Update
Sopen03g019370 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen06g008750 No alias Retroviral aspartyl protease 0.03 Orthogroups_2024-Update
Sopen06g011960 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
Sopen07g015680 No alias Retroviral aspartyl protease 0.02 Orthogroups_2024-Update
Sopen10g005990 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.01 Orthogroups_2024-Update
evm.model.tig00000158.97 No alias (atmg00860 : 98.6) hypothetical protein; DNA/RNA... 0.01 Orthogroups_2024-Update
evm.model.tig00000658.17 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023780 Chromo_domain 979 1032
IPR000477 RT_dom 438 595
IPR005162 Retrotrans_gag_dom 155 248
No external refs found!