Sopen08g005520

Description : Ribosomal protein L6

Gene families : OG_42_0002219 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002219_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g005520
Cluster	HCCA clusters: Cluster_347

Target	Alias	Description	ECC score	Gene Family Method
269009	No alias	Ribosomal protein L6 family	0.06	Orthogroups_2024-Update
A4A49_13754	No alias	60s ribosomal protein l9-1	0.03	Orthogroups_2024-Update
At4g10450	No alias	60S ribosomal protein L9-2...	0.03	Orthogroups_2024-Update
Bradi1g21850	No alias	Ribosomal protein L6 family	0.04	Orthogroups_2024-Update
Bradi3g00640	No alias	Ribosomal protein L6 family	0.05	Orthogroups_2024-Update
Brara.B02434.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Brara.B02733.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.I02353.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.I02694.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.14	Orthogroups_2024-Update
Cre12.g494050	No alias	Ribosomal protein L6 family	0.06	Orthogroups_2024-Update
Glyma.04G226500	No alias	Ribosomal protein L6 family	0.03	Orthogroups_2024-Update
Glyma.04G226900	No alias	Ribosomal protein L6 family	0.07	Orthogroups_2024-Update
Glyma.06G138400	No alias	Ribosomal protein L6 family	0.06	Orthogroups_2024-Update
Glyma.06G138600	No alias	Ribosomal protein L6 family	0.03	Orthogroups_2024-Update
HORVU0Hr1G006020.2	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
HORVU3Hr1G001140.5	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
HORVU7Hr1G002060.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Kfl00025_0220	kfl00025_0220_v1.1	(p30707\|rl9_pea : 285.0) 60S ribosomal protein L9...	0.07	Orthogroups_2024-Update
MA_38141g0010	No alias	(p49210\|rl9_orysa : 311.0) 60S ribosomal protein L9 -...	0.02	Orthogroups_2024-Update
Potri.001G454000	No alias	Ribosomal protein L6 family	0.05	Orthogroups_2024-Update
Potri.011G148700	No alias	Ribosomal protein L6 family	0.07	Orthogroups_2024-Update
Pp1s164_98V6	No alias	60s ribosomal protein l9	0.06	Orthogroups_2024-Update
Pp1s327_43V6	No alias	60s ribosomal protein l9	0.12	Orthogroups_2024-Update
Pp1s58_149V6	No alias	60s ribosomal protein l9	0.08	Orthogroups_2024-Update
Pp1s79_157V6	No alias	60s ribosomal protein l9	0.1	Orthogroups_2024-Update
Seita.1G003100.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.05	Orthogroups_2024-Update
Seita.4G005200.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Sobic.010G005300.1	No alias	component *(uL6) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Solyc08g014550	No alias	60S ribosomal L9 (AHRD V3.3 *** A0A0B0N9P7_GOSAR)	0.1	Orthogroups_2024-Update
Solyc12g096700	No alias	60S ribosomal L9 (AHRD V3.3 *** A0A0B0N9P7_GOSAR)	0.06	Orthogroups_2024-Update
evm.model.contig_564.5	No alias	(at4g10450 : 215.0) Ribosomal protein L6 family;...	0.12	Orthogroups_2024-Update
evm.model.tig00001532.12	No alias	(p49210\|rl9_orysa : 196.0) 60S ribosomal protein L9 -...	0.04	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR020040	Ribosomal_L6_a/b-dom	12	90
IPR020040	Ribosomal_L6_a/b-dom	102	181

External Links

No external refs found!

Sopen08g005520

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation