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  5. Solyc02g081250

Solyc02g081250


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *-* A0A103Y0J8_CYNCS)


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g081250
Cluster HCCA clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
112120 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
A4A49_35982 No alias ultraviolet-b receptor uvr8 0.02 Orthogroups_2024-Update
At3g47660 No alias Regulator of chromosome condensation (RCC1) family... 0.02 Orthogroups_2024-Update
Bradi3g51950 No alias Regulator of chromosome condensation (RCC1) family with... 0.01 Orthogroups_2024-Update
HORVU1Hr1G078890.8 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os05g01610 No alias FYVE zinc finger domain containing protein, expressed 0.02 Orthogroups_2024-Update
Sopen02g025890 No alias Regulator of chromosome condensation (RCC1) repeat 0.13 Orthogroups_2024-Update
Sopen05g003240 No alias Regulator of chromosome condensation (RCC1) repeat 0.02 Orthogroups_2024-Update
Sopen12g034380 No alias Regulator of chromosome condensation (RCC1) repeat 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
MF GO:0003872 6-phosphofructokinase activity IEP Predicted GO
MF GO:0004014 adenosylmethionine decarboxylase activity IEP Predicted GO
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006021 inositol biosynthetic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006535 cysteine biosynthetic process from serine IEP Predicted GO
BP GO:0006563 L-serine metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006595 polyamine metabolic process IEP Predicted GO
BP GO:0006596 polyamine biosynthetic process IEP Predicted GO
BP GO:0006597 spermine biosynthetic process IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006814 sodium ion transport IEP Predicted GO
BP GO:0008215 spermine metabolic process IEP Predicted GO
BP GO:0008216 spermidine metabolic process IEP Predicted GO
BP GO:0008272 sulfate transport IEP Predicted GO
BP GO:0008295 spermidine biosynthetic process IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
MF GO:0009001 serine O-acetyltransferase activity IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009070 serine family amino acid biosynthetic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0015116 sulfate transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016412 serine O-acyltransferase activity IEP Predicted GO
MF GO:0016413 O-acetyltransferase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0019344 cysteine biosynthetic process IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044283 small molecule biosynthetic process IEP Predicted GO
BP GO:0046165 alcohol biosynthetic process IEP Predicted GO
BP GO:0046173 polyol biosynthetic process IEP Predicted GO
BP GO:0072348 sulfur compound transport IEP Predicted GO
BP GO:0097164 ammonium ion metabolic process IEP Predicted GO
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predicted GO
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 1673 1722
IPR002885 Pentatricopeptide_repeat 1794 1842
IPR002885 Pentatricopeptide_repeat 1608 1652
IPR002885 Pentatricopeptide_repeat 1422 1469
IPR002885 Pentatricopeptide_repeat 1864 1912
IPR002885 Pentatricopeptide_repeat 1496 1540
IPR000306 Znf_FYVE 670 731
IPR013591 Brevis_radix_dom 1037 1091
IPR027988 BRX_N 916 940
IPR000408 Reg_chr_condens 613 661
IPR000408 Reg_chr_condens 445 494
IPR000408 Reg_chr_condens 339 387
IPR000408 Reg_chr_condens 509 557
IPR002885 Pentatricopeptide_repeat 1930 1963
IPR002885 Pentatricopeptide_repeat 1758 1787
IPR002885 Pentatricopeptide_repeat 2007 2031
IPR002885 Pentatricopeptide_repeat 2043 2071
IPR002885 Pentatricopeptide_repeat 1578 1601
IPR002885 Pentatricopeptide_repeat 1326 1352
IPR002885 Pentatricopeptide_repeat 1359 1387
No external refs found!