Sopen08g007650

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g007650
Cluster	HCCA clusters: Cluster_413

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358542	No alias	Function unknown	0.02	Orthogroups_2024-Update
HORVU4Hr1G045770.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os02g17292	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g33450	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g24400	No alias	retrotransposon protein, putative, unclassified, expressed	0.02	Orthogroups_2024-Update
Solyc01g016710	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc02g021130	No alias	No description available	0.03	Orthogroups_2024-Update
Solyc10g054430	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen00g001490	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.05	Orthogroups_2024-Update
Sopen00g001810	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen01g011220	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen01g012260	No alias	Retroviral aspartyl protease	0.04	Orthogroups_2024-Update
Sopen01g012860	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen02g001080	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen02g011110	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen03g017250	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen03g021300	No alias	hypothetical protein	0.04	Orthogroups_2024-Update
Sopen05g012930	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen05g016320	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen05g017590	No alias	Retrotransposon gag protein	0.05	Orthogroups_2024-Update
Sopen05g022330	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.04	Orthogroups_2024-Update
Sopen05g026780	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen06g009540	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen06g014260	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen07g004930	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.06	Orthogroups_2024-Update
Sopen07g021480	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen08g020120	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen08g027770	No alias	Cytochrome P450	0.03	Orthogroups_2024-Update
Sopen09g020310	No alias	Retroviral aspartyl protease	0.02	Orthogroups_2024-Update
Sopen10g007750	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen10g011720	No alias	Integrase core domain	0.02	Orthogroups_2024-Update
Sopen10g015090	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen11g008450	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen11g012620	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.06	Orthogroups_2024-Update
Sopen11g015020	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen11g020800	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen12g011100	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen12g011860	No alias	Retroviral aspartyl protease	0.03	Orthogroups_2024-Update
Sopen12g019980	No alias	Integrase core domain	0.03	Orthogroups_2024-Update
Sopen12g028100	No alias	Retrotransposon gag protein	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	1682	1778
IPR000477	RT_dom	363	522
IPR001584	Integrase_cat-core	905	1016

External Links

No external refs found!

Sopen08g007650

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation