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  5. Sopen08g007860

Sopen08g007860


Description : Integrase core domain


Gene families : OG_42_0001348 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001348_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g007860
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Sopen01g007460 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g020350 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen07g022930 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen10g006540 No alias Retroviral aspartyl protease 0.04 Orthogroups_2024-Update
Sopen11g014000 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen12g017150 No alias Retrotransposon gag protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 520 630
IPR001584 Integrase_cat-core 968 1078
IPR005162 Retrotrans_gag_dom 133 198
No external refs found!