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  5. Sopen08g010500

Sopen08g010500


Description : PPR repeat


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g010500
Cluster HCCA clusters: Cluster_383

Target Alias Description ECC score Gene Family Method Actions
130453 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
A4A49_29893 No alias pentatricopeptide repeat-containing protein, chloroplastic 0.02 Orthogroups_2024-Update
At3g03580 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.04 Orthogroups_2024-Update
At3g20730 No alias Pentatricopeptide repeat-containing protein At3g20730... 0.04 Orthogroups_2024-Update
Glyma.07G127400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G084700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os05g49920 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_7379g0020 No alias (at4g02750 : 568.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00015058-RA No alias (at1g11290 : 635.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Potri.002G214900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Seita.8G163400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G213100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G161100.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032867 DYW_dom 369 492
IPR002885 Pentatricopeptide_repeat 270 294
IPR002885 Pentatricopeptide_repeat 69 95
IPR002885 Pentatricopeptide_repeat 97 127
IPR002885 Pentatricopeptide_repeat 196 242
No external refs found!